Avogadro Namespace Reference

Classes
class	Atom
	Atom Class. More...
class	Bond
	Bond Class. More...
class	BoxControl
class	Camera
	Representation of the camera looking at the molecule. More...
class	Color
	Map a primitive (atom, bond, etc.) to a OpenGL red, green, blue, alpha color. More...
class	Cube
class	Cylinder
	This class represents and draws a cylinder. More...
class	ElementTranslator
	Internationalization of element names. More...
class	Engine
	Engine plugin interface. More...
class	Extension
	Interface for adding extensions. More...
class	FileTreeItem
	An item for a Tree model/view of a file or directory. More...
class	Fragment
	Fragment Class. More...
class	GLGraphicsView
class	Library
	Interface for static calls for versions, installation prefix, and other compiler macros. More...
class	GLPainter
	Implementation of the Painter class using OpenGL. More...
class	GLHit
	Class for wrapping hits from GL picking. More...
class	GLWidget
	GL widget class for rendering molecules. More...
class	IDList
	List mapping primitives and unique ids. More...
class	Line
	Line Class. More...
class	Mesh
class	MeshGenerator
	Class that can generate Mesh objects from Cube objects. More...
class	Molecule
	Molecule Class. More...
class	Navigate
	Navigation functions to simplify common tasks. More...
class	Painter
	Pure virtual Painter base class to be implemented by painters. More...
class	PainterDevice
class	ElementItem
	An element item, intended to display a single element. More...
class	ElementDetail
	An item box displaying more detailed information on the element. More...
class	PeriodicTableScene
	This class encapsulates the scene, all items are contained in it. More...
class	PeriodicTableView
	This class implements the view of the PeriodicTableScene. More...
class	Plugin
	Interface for plugins. More...
class	PluginFactory
	Generates new instances of the Plugin class for which it is defined. More...
class	PluginDialog
class	PluginItemModel
class	PluginListView
class	PluginItem
class	PluginManager
class	Point
	Point Class. More...
class	Primitive
	Base class for all primitives (Molecule, Atom, Bond, Residue, ...). More...
class	PrimitiveItemModel
class	PrimitiveList
	Class which set of Primitives. More...
class	PythonError
class	PythonInterpreter
class	PythonScript
class	Residue
	Residue Class. More...
class	Sphere
class	TextRenderer
class	Tool
	Interface for tool plugins. More...
class	ToolGroup
	Manager for GLWidget Tools. More...
class	UndoSequence
	Provides a sequence of Undo/Redo commands in a single command. More...
Functions
bool	engineLessThan (const Engine *lhs, const Engine *rhs)
PythonError *	pythonError ()
void	prepareToCatchError ()
void	catchError ()
bool	toolGreaterThan (const Tool *first, const Tool *second)
Variables
ElementTranslator	elementTranslator
const int	PAINTER_GLOBAL_QUALITY_SETTINGS = 5
const int	DEFAULT_GLOBAL_QUALITY_SETTING = PAINTER_GLOBAL_QUALITY_SETTINGS - 3
const int	PAINTER_DETAIL_LEVELS = 10
const int	PAINTER_SPHERES_LEVELS_ARRAY [5][10]
const double	PAINTER_SPHERES_LIMIT_MIN_LEVEL = 0.005
const double	PAINTER_SPHERES_LIMIT_MAX_LEVEL = 0.15
const int	PAINTER_CYLINDERS_LEVELS_ARRAY [5][10]
const double	PAINTER_CYLINDERS_LIMIT_MIN_LEVEL = 0.001
const double	PAINTER_CYLINDERS_LIMIT_MAX_LEVEL = 0.03
const int	PAINTER_MAX_DETAIL_LEVEL = PAINTER_DETAIL_LEVELS - 1
const double	PAINTER_SPHERES_SQRT_LIMIT_MIN_LEVEL = sqrt ( PAINTER_SPHERES_LIMIT_MIN_LEVEL )
const double	PAINTER_SPHERES_SQRT_LIMIT_MAX_LEVEL = sqrt ( PAINTER_SPHERES_LIMIT_MAX_LEVEL )
const double	PAINTER_SPHERES_DETAIL_COEFF
const double	PAINTER_CYLINDERS_SQRT_LIMIT_MIN_LEVEL = sqrt ( PAINTER_CYLINDERS_LIMIT_MIN_LEVEL )
const double	PAINTER_CYLINDERS_SQRT_LIMIT_MAX_LEVEL = sqrt ( PAINTER_CYLINDERS_LIMIT_MAX_LEVEL )
const double	PAINTER_CYLINDERS_DETAIL_COEFF
const double	PAINTER_FRUSTUM_CULL_TRESHOLD = -0.8
const unsigned long	FALSE_ID = -1

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Function Documentation

A_EXPORT void Avogadro::catchError

(

)

bool Avogadro::engineLessThan	(	const Engine *	lhs,
		const Engine *	rhs
	)

A_EXPORT void Avogadro::prepareToCatchError

(

)

A_EXPORT PythonError * Avogadro::pythonError

(

)

bool Avogadro::toolGreaterThan	(	const Tool *	first,
		const Tool *	second
	)

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Variable Documentation

const int Avogadro::DEFAULT_GLOBAL_QUALITY_SETTING = PAINTER_GLOBAL_QUALITY_SETTINGS - 3

A_EXPORT ElementTranslator Avogadro::elementTranslator

const unsigned long Avogadro::FALSE_ID = -1

const double Avogadro::PAINTER_CYLINDERS_DETAIL_COEFF

Initial value:

 static_cast<double> ( PAINTER_MAX_DETAIL_LEVEL - 1 )
    / ( PAINTER_CYLINDERS_SQRT_LIMIT_MAX_LEVEL - PAINTER_CYLINDERS_SQRT_LIMIT_MIN_LEVEL )

const int Avogadro::PAINTER_CYLINDERS_LEVELS_ARRAY[5][10]

Initial value:

    { {0, 3, 5, 5, 8, 8, 12, 12, 16, 16},
      {0, 4, 6, 9, 12, 12, 16, 16, 20, 20},
      {0, 4, 6, 10, 14, 18, 22, 26, 32, 40},
      {0, 4, 6, 12, 16, 20, 24, 28, 34, 42},
      {0, 5, 10, 15, 20, 25, 30, 35, 40, 45}
    }

const double Avogadro::PAINTER_CYLINDERS_LIMIT_MAX_LEVEL = 0.03

const double Avogadro::PAINTER_CYLINDERS_LIMIT_MIN_LEVEL = 0.001

const double Avogadro::PAINTER_CYLINDERS_SQRT_LIMIT_MAX_LEVEL = sqrt ( PAINTER_CYLINDERS_LIMIT_MAX_LEVEL )

const double Avogadro::PAINTER_CYLINDERS_SQRT_LIMIT_MIN_LEVEL = sqrt ( PAINTER_CYLINDERS_LIMIT_MIN_LEVEL )

const int Avogadro::PAINTER_DETAIL_LEVELS = 10

const double Avogadro::PAINTER_FRUSTUM_CULL_TRESHOLD = -0.8

const int Avogadro::PAINTER_GLOBAL_QUALITY_SETTINGS = 5

const int Avogadro::PAINTER_MAX_DETAIL_LEVEL = PAINTER_DETAIL_LEVELS - 1

const double Avogadro::PAINTER_SPHERES_DETAIL_COEFF

Initial value:

 static_cast<double> ( PAINTER_MAX_DETAIL_LEVEL - 1 )
    / ( PAINTER_SPHERES_SQRT_LIMIT_MAX_LEVEL - PAINTER_SPHERES_SQRT_LIMIT_MIN_LEVEL )

const int Avogadro::PAINTER_SPHERES_LEVELS_ARRAY[5][10]

Initial value:

    { {0, 0, 1, 1, 2, 2, 3, 3, 4, 4},
      {0, 1, 2, 3, 4, 4, 5, 5, 6, 6},
      {1, 2, 3, 4, 5, 6, 7, 8, 9, 9},
      {1, 2, 3, 4, 6, 7, 8, 9, 11, 12},
      {2, 3, 4, 5, 7, 9, 12, 15, 18, 22}
    }

const double Avogadro::PAINTER_SPHERES_LIMIT_MAX_LEVEL = 0.15

const double Avogadro::PAINTER_SPHERES_LIMIT_MIN_LEVEL = 0.005

const double Avogadro::PAINTER_SPHERES_SQRT_LIMIT_MAX_LEVEL = sqrt ( PAINTER_SPHERES_LIMIT_MAX_LEVEL )

const double Avogadro::PAINTER_SPHERES_SQRT_LIMIT_MIN_LEVEL = sqrt ( PAINTER_SPHERES_LIMIT_MIN_LEVEL )

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