, including all inherited members.
| addAtom() | Avogadro::Molecule | |
| addAtom(unsigned long id) | Avogadro::Molecule | |
| addAtom(int atomicNum, const Eigen::Vector3d &pos) | Avogadro::Molecule | |
| addAtom(const Atom &other) | Avogadro::Molecule | |
| addBond() | Avogadro::Molecule | |
| addBond(unsigned long id) | Avogadro::Molecule | |
| addBond(unsigned long beginAtomId, unsigned long endAtomId, short order=1) | Avogadro::Molecule | |
| addBond(Atom *beginAtom, Atom *endAtom, short order=1) | Avogadro::Molecule | |
| addConformer(const std::vector< Eigen::Vector3d > &conformer, unsigned int index) | Avogadro::Molecule | |
| addConformer(unsigned int index) | Avogadro::Molecule | |
| addCube() | Avogadro::Molecule | |
| addCube(unsigned long id) | Avogadro::Molecule | |
| addHydrogens(Atom *atom=0, const QList< unsigned long > &atomIds=QList< unsigned long >(), const QList< unsigned long > &bondIds=QList< unsigned long >()) | Avogadro::Molecule | |
| addMesh() | Avogadro::Molecule | |
| addMesh(unsigned long id) | Avogadro::Molecule | |
| addResidue() | Avogadro::Molecule | |
| addResidue(unsigned long id) | Avogadro::Molecule | |
| addRing() | Avogadro::Molecule | |
| addRing(unsigned long id) | Avogadro::Molecule | |
| addZMatrix() | Avogadro::Molecule | |
| atom(int index) const | Avogadro::Molecule | [inline] |
| atomAdded(Atom *atom) | Avogadro::Molecule | [signal] |
| atomById(unsigned long id) const | Avogadro::Molecule | [inline] |
| atomPos(unsigned long id) const | Avogadro::Molecule | [inline] |
| atomRemoved(Atom *atom) | Avogadro::Molecule | [signal] |
| atoms() const | Avogadro::Molecule | |
| AtomType enum value | Avogadro::Primitive | |
| atomUpdated(Atom *atom) | Avogadro::Molecule | [signal] |
| blockSignals(bool block) | QObject | |
| bond(int index) const | Avogadro::Molecule | [inline] |
| bond(unsigned long id1, unsigned long id2) | Avogadro::Molecule | |
| bond(const Atom *, const Atom *) | Avogadro::Molecule | |
| bondAdded(Bond *bond) | Avogadro::Molecule | [signal] |
| bondById(unsigned long id) const | Avogadro::Molecule | [inline] |
| bondRemoved(Bond *bond) | Avogadro::Molecule | [signal] |
| bonds() const | Avogadro::Molecule | |
| BondType enum value | Avogadro::Primitive | |
| bondUpdated(Bond *bond) | Avogadro::Molecule | [signal] |
| calculateAromaticity() const | Avogadro::Molecule | |
| calculateGroupIndices() const | Avogadro::Molecule | |
| calculatePartialCharges() const | Avogadro::Molecule | |
| center() const | Avogadro::Molecule | |
| ChainType enum value | Avogadro::Primitive | |
| checkConnectArgs(const char *signal, const QObject *object, const char *method) | QObject | [protected] |
| child(const char *objName, const char *inheritsClass, bool recursiveSearch) const | QObject | |
| childEvent(QChildEvent *event) | QObject | [protected, virtual] |
| children() const | QObject | |
| className() const | QObject | |
| clear() | Avogadro::Molecule | |
| clearConformers() | Avogadro::Molecule | |
| computeGeomInfo() const | Avogadro::Molecule | [protected] |
| conformer(unsigned int index) | Avogadro::Molecule | |
| conformers() const | Avogadro::Molecule | |
| conformerSize() | Avogadro::Molecule | [inline] |
| connect(const QObject *sender, const char *signal, const QObject *receiver, const char *method, Qt::ConnectionType type) | QObject | [static] |
| connect(const QObject *sender, const QMetaMethod &signal, const QObject *receiver, const QMetaMethod &method, Qt::ConnectionType type) | QObject | [static] |
| connect(const QObject *sender, const char *signal, const char *method, Qt::ConnectionType type) const | QObject | |
| connectNotify(const char *signal) | QObject | [protected, virtual] |
| copyAtomsAndBonds(const QList< Atom * > &atoms, const QList< Bond * > &bonds) | Avogadro::Molecule | |
| copyAtomsAndBonds(const PrimitiveList &atomsAndBonds) | Avogadro::Molecule | |
| cube(int index) const | Avogadro::Molecule | |
| cubeById(unsigned long id) const | Avogadro::Molecule | |
| cubes() const | Avogadro::Molecule | |
| CubeType enum value | Avogadro::Primitive | |
| currentConformer() const | Avogadro::Molecule | |
| customEvent(QEvent *event) | QObject | [protected, virtual] |
| d_ptr (defined in Avogadro::Molecule) | Avogadro::Molecule | [protected] |
| deleteLater() | QObject | |
| destroyed(QObject *obj) | QObject | |
| dipoleMoment(bool *estimate=0) const | Avogadro::Molecule | |
| disconnect(const QObject *sender, const char *signal, const QObject *receiver, const char *method) | QObject | [static] |
| disconnect(const QObject *sender, const QMetaMethod &signal, const QObject *receiver, const QMetaMethod &method) | QObject | [static] |
| disconnect(const char *signal, const QObject *receiver, const char *method) | QObject | |
| disconnect(const QObject *receiver, const char *method) | QObject | |
| disconnectNotify(const char *signal) | QObject | [protected, virtual] |
| dumpObjectInfo() | QObject | |
| dumpObjectTree() | QObject | |
| dynamicPropertyNames() const | QObject | |
| energies() const | Avogadro::Molecule | |
| energy(int index=-1) const | Avogadro::Molecule | |
| event(QEvent *e) | QObject | [virtual] |
| eventFilter(QObject *watched, QEvent *event) | QObject | [virtual] |
| farthestAtom() const | Avogadro::Molecule | |
| fileName() const | Avogadro::Molecule | |
| findChild(const QString &name) const | QObject | |
| findChildren(const QString &name) const | QObject | |
| findChildren(const QRegExp ®Exp) const | QObject | |
| FirstType enum value | Avogadro::Primitive | |
| FragmentType enum value | Avogadro::Primitive | |
| GridType enum value | Avogadro::Primitive | |
| id() const | Avogadro::Primitive | [inline] |
| index() const | Avogadro::Primitive | [inline] |
| inherits(const char *className) const | QObject | |
| insertChild(QObject *object) | QObject | |
| installEventFilter(QObject *filterObj) | QObject | |
| isA(const char *className) const | QObject | |
| isWidgetType() const | QObject | |
| killTimer(int id) | QObject | |
| LastType enum value | Avogadro::Primitive | |
| LineType enum value | Avogadro::Primitive | |
| lock() const | Avogadro::Molecule | |
| m_atomConformers | Avogadro::Molecule | [protected] |
| m_atomList (defined in Avogadro::Molecule) | Avogadro::Molecule | [protected] |
| m_atomPos (defined in Avogadro::Molecule) | Avogadro::Molecule | [protected] |
| m_atoms (defined in Avogadro::Molecule) | Avogadro::Molecule | [protected] |
| m_bondList (defined in Avogadro::Molecule) | Avogadro::Molecule | [protected] |
| m_bonds (defined in Avogadro::Molecule) | Avogadro::Molecule | [protected] |
| m_currentConformer (defined in Avogadro::Molecule) | Avogadro::Molecule | [mutable, protected] |
| m_dipoleMoment (defined in Avogadro::Molecule) | Avogadro::Molecule | [mutable, protected] |
| m_estimatedDipoleMoment (defined in Avogadro::Molecule) | Avogadro::Molecule | [mutable, protected] |
| m_fileName (defined in Avogadro::Molecule) | Avogadro::Molecule | [protected] |
| m_id (defined in Avogadro::Primitive) | Avogadro::Primitive | [protected] |
| m_index (defined in Avogadro::Primitive) | Avogadro::Primitive | [protected] |
| m_invalidAromaticity (defined in Avogadro::Molecule) | Avogadro::Molecule | [mutable, protected] |
| m_invalidPartialCharges (defined in Avogadro::Molecule) | Avogadro::Molecule | [mutable, protected] |
| m_lock (defined in Avogadro::Molecule) | Avogadro::Molecule | [protected] |
| m_type (defined in Avogadro::Primitive) | Avogadro::Primitive | [protected] |
| mesh(int index) const | Avogadro::Molecule | |
| meshById(unsigned long id) const | Avogadro::Molecule | |
| meshes() const | Avogadro::Molecule | |
| MeshType enum value | Avogadro::Primitive | |
| metaObject() const | QObject | [virtual] |
| Molecule(QObject *parent=0) | Avogadro::Molecule | |
| Molecule(const Molecule &other) | Avogadro::Molecule | |
| moleculeChanged() | Avogadro::Molecule | [signal] |
| MoleculeType enum value | Avogadro::Primitive | |
| moveToThread(QThread *targetThread) | QObject | |
| name() const | QObject | |
| name(const char *defaultName) const | QObject | |
| NonbondedType enum value | Avogadro::Primitive | |
| normalizeSignalSlot(const char *signalSlot) | QObject | [protected, static] |
| normalVector() const | Avogadro::Molecule | |
| numAtoms() const | Avogadro::Molecule | |
| numBonds() const | Avogadro::Molecule | |
| numConformers() const | Avogadro::Molecule | |
| numCubes() const | Avogadro::Molecule | |
| numMeshes() const | Avogadro::Molecule | |
| numResidues() const | Avogadro::Molecule | |
| numRings() const | Avogadro::Molecule | |
| numZMatrices() const | Avogadro::Molecule | |
| objectName | QObject | |
| objectName() const | QObject | |
| OBMol() const | Avogadro::Molecule | |
| OBUnitCell() const | Avogadro::Molecule | |
| operator+=(const Molecule &other) | Avogadro::Molecule | |
| operator=(const Molecule &other) | Avogadro::Molecule | |
| OtherType enum value | Avogadro::Primitive | |
| parent() const | QObject | |
| PlaneType enum value | Avogadro::Primitive | |
| PointType enum value | Avogadro::Primitive | |
| Primitive(QObject *parent=0) | Avogadro::Primitive | |
| Primitive(Type type, QObject *parent=0) | Avogadro::Primitive | [explicit] |
| Primitive(PrimitivePrivate &dd, QObject *parent=0) (defined in Avogadro::Primitive) | Avogadro::Primitive | [protected] |
| Primitive(PrimitivePrivate &dd, Type type, QObject *parent=0) (defined in Avogadro::Primitive) | Avogadro::Primitive | [protected] |
| primitiveAdded(Primitive *primitive) | Avogadro::Molecule | [signal] |
| primitiveRemoved(Primitive *primitive) | Avogadro::Molecule | [signal] |
| primitiveUpdated(Primitive *primitive) | Avogadro::Molecule | [signal] |
| property(const char *name) const | QObject | |
| QObject(QObject *parent) | QObject | |
| QObject(QObject *parent, const char *name) | QObject | |
| radius() const | Avogadro::Molecule | |
| receivers(const char *signal) const | QObject | [protected] |
| removeAtom(Atom *atom) | Avogadro::Molecule | |
| removeAtom(unsigned long id) | Avogadro::Molecule | |
| removeBond(Bond *bond) | Avogadro::Molecule | |
| removeBond(unsigned long id) | Avogadro::Molecule | |
| removeChild(QObject *object) | QObject | |
| removeCube(Cube *cube) | Avogadro::Molecule | |
| removeCube(unsigned long id) | Avogadro::Molecule | |
| removeEventFilter(QObject *obj) | QObject | |
| removeHydrogens(Atom *atom=0) | Avogadro::Molecule | |
| removeMesh(Mesh *mesh) | Avogadro::Molecule | |
| removeMesh(unsigned long id) | Avogadro::Molecule | |
| removeResidue(Residue *residue) | Avogadro::Molecule | |
| removeResidue(unsigned long id) | Avogadro::Molecule | |
| removeRing(Fragment *ring) | Avogadro::Molecule | |
| removeRing(unsigned long id) | Avogadro::Molecule | |
| removeZMatrix(ZMatrix *zmatrix) | Avogadro::Molecule | |
| residue(int index) | Avogadro::Molecule | |
| residue(int index) const (defined in Avogadro::Molecule) | Avogadro::Molecule | |
| residueById(unsigned long id) const | Avogadro::Molecule | |
| residues() const | Avogadro::Molecule | |
| ResidueType enum value | Avogadro::Primitive | |
| rings() | Avogadro::Molecule | |
| sender() const | QObject | [protected] |
| senderSignalIndex() const | QObject | [protected] |
| setAllConformers(const std::vector< std::vector< Eigen::Vector3d > * > conformers, bool deleteExisting=true) | Avogadro::Molecule | |
| setAtomPos(unsigned long id, const Eigen::Vector3d &vec) | Avogadro::Molecule | |
| setAtomPos(unsigned long id, const Eigen::Vector3d *vec) | Avogadro::Molecule | |
| setConformer(unsigned int index) | Avogadro::Molecule | |
| setDipoleMoment(const Eigen::Vector3d &moment) | Avogadro::Molecule | |
| setEnergies(const std::vector< double > &energies) | Avogadro::Molecule | |
| setEnergy(double energy) | Avogadro::Molecule | |
| setEnergy(int index, double energy) | Avogadro::Molecule | |
| setFileName(const QString &name) | Avogadro::Molecule | |
| setId(unsigned long m_id) | Avogadro::Primitive | [protected] |
| setIndex(unsigned long m_index) | Avogadro::Primitive | [protected] |
| setName(const char *name) | QObject | |
| setObjectName(const QString &name) | QObject | |
| setOBMol(OpenBabel::OBMol *obmol) | Avogadro::Molecule | |
| setOBUnitCell(OpenBabel::OBUnitCell *obunitcell) | Avogadro::Molecule | |
| setParent(QObject *parent) | QObject | |
| setProperty(const char *name, const QVariant &value) | QObject | |
| signalsBlocked() const | QObject | |
| startTimer(int interval) | QObject | |
| SurfaceType enum value | Avogadro::Primitive | |
| TextType enum value | Avogadro::Primitive | |
| thread() const | QObject | |
| timerEvent(QTimerEvent *event) | QObject | [protected, virtual] |
| tr(const char *sourceText, const char *disambiguation, int n) | QObject | [static] |
| translate(const Eigen::Vector3d &) | Avogadro::Molecule | |
| trUtf8(const char *sourceText, const char *disambiguation, int n) | QObject | [static] |
| Type enum name | Avogadro::Primitive | |
| type (defined in Avogadro::Primitive) | Avogadro::Primitive | |
| type() const | Avogadro::Primitive | |
| update() | Avogadro::Molecule | |
| updated() | Avogadro::Primitive | [signal] |
| updateMolecule() | Avogadro::Molecule | [slot] |
| VectorType enum value | Avogadro::Primitive | |
| zMatrices() const | Avogadro::Molecule | |
| zMatrix(int index) const | Avogadro::Molecule | |
| ~Molecule() | Avogadro::Molecule | [virtual] |
| ~Primitive() | Avogadro::Primitive | [virtual] |
| ~QObject() | QObject | [virtual] |
